Built-in Supported Scientific Packages

  • Last curated update: 2026-03-14 17:20:27 EST

  • Total built-in packages: 167

Built-in package catalog

Package ID

Title

Repository

abinit

ABINIT Electronic-Structure Suite

skilled-scipkg/abinit

acts

ACTS Common Tracking Software

skilled-scipkg/acts

aiida-core

AiiDA Core Workflow Engine

skilled-scipkg/aiida-core

alamode

ALAMODE Lattice Thermal Transport

skilled-scipkg/ALAMODE

amuse

AMUSE Astrophysical Simulation Environment

skilled-scipkg/amuse

anndata

AnnData Annotated Data Matrices

skilled-scipkg/anndata

arbor

Arbor Neural Simulation Library

skilled-scipkg/arbor

arc

ARC Alkali Rydberg Calculator

skilled-scipkg/ARC-Alkali-Rydberg-Calculator

astropy

Astropy Astronomy Core Library

skilled-scipkg/astropy

astroquery

Astroquery Astronomical Data Access

skilled-scipkg/astroquery

atomate2

Atomate2 Materials Workflow Library

skilled-scipkg/atomate2

atomsmltr

atomSmltr Laser Cooling and Trapping Simulator

skilled-scipkg/atomSmltr

awkward

Awkward Array

skilled-scipkg/awkward

batman

BATMAN Exoplanet Transit Light-Curve Modeler

skilled-scipkg/batman

biopython

Biopython

skilled-scipkg/biopython

bloqade

Bloqade Neutral Atom Quantum SDK

skilled-scipkg/bloqade

brian2

Brian2 Spiking Neural Network Simulator

skilled-scipkg/brian2

bullet3

Bullet Physics SDK (bullet3)

skilled-scipkg/bullet3

calculix

CalculiX Finite Element Program

skilled-scipkg/CalculiX

cantera

Cantera Chemical Kinetics and Combustion

skilled-scipkg/cantera

cavity-md-ipi

CavMD: Cavity Molecular Dynamics

skilled-scipkg/cavity-md-ipi

ccdproc

CCDProc CCD Image Reduction

skilled-scipkg/ccdproc

celerite2

celerite2 Gaussian Process Toolkit

skilled-scipkg/celerite2

cellrank

CellRank Single-Cell Fate Mapping

skilled-scipkg/cellrank

cesm

CESM (Community Earth System Model)

skilled-scipkg/CESM

chemicals

Chemicals Thermophysical Data Library

skilled-scipkg/chemicals

chempy

ChemPy Chemical Modeling Toolkit

skilled-scipkg/chempy

cirq

Cirq Quantum Circuit Framework

skilled-scipkg/Cirq

coffea

Coffea Collider HEP Analysis Framework

skilled-scipkg/coffea

cp2k

CP2K Quantum Chemistry Suite

skilled-scipkg/cp2k

custodian

Custodian JIT Simulation Job Manager

skilled-scipkg/custodian

dart

DART Robotics Dynamics Engine

skilled-scipkg/dart

datamol

Datamol Molecular Processing Toolkit

skilled-scipkg/datamol

dd4hep

DD4hep Detector Description Toolkit

skilled-scipkg/DD4hep

dealii

deal.II Finite Element Library

skilled-scipkg/dealii

deepchem

DeepChem Molecular Machine Learning Toolkit

skilled-scipkg/deepchem

delphes

Delphes Fast Collider Simulation

skilled-scipkg/delphes

devito

Devito Stencil Compiler

skilled-scipkg/devito

dftd4

DFT-D4 Dispersion Correction

skilled-scipkg/dftd4

dftk-jl

DFTK.jl Density-Functional Toolkit

skilled-scipkg/DFTK.jl

dolfinx

DOLFINx

skilled-scipkg/dolfinx

drake

Drake Robotics Toolkit

skilled-scipkg/drake

dumux

DuMux Porous Media Simulator

skilled-scipkg/dumux

elk

Elk All-Electron DFT Code

skilled-scipkg/elk

elmerfem

Elmer FEM

skilled-scipkg/elmerfem

enzo-e

Enzo-E Exascale Astrophysics Simulator

skilled-scipkg/enzo-e

espresso

ESPResSo Soft-Matter Molecular Dynamics

skilled-scipkg/espresso

exoplanet

exoplanet Bayesian Exoplanet Inference Toolkit

skilled-scipkg/exoplanet

fairroot

FairRoot Particle Physics Framework

skilled-scipkg/FairRoot

fbpic

FBPIC Spectral Quasi-3D PIC

skilled-scipkg/fbpic

fdtdbath-meep

Modified Meep FDTD Electromagnetics Simulator for FDTD-Bath approach of condensed-phase polaritonics

skilled-scipkg/fdtdbath-meep

geant4

Geant4 Particle-Matter Simulation Toolkit

skilled-scipkg/geant4

gprmax

gprMax Ground Penetrating Radar Simulator

skilled-scipkg/gprMax

gromacs

GROMACS Molecular Dynamics

skilled-scipkg/gromacs

gwaslab

GWASLab Summary Statistics Toolkit

skilled-scipkg/gwaslab

gz-sim

Gazebo Sim (gz-sim)

skilled-scipkg/gz-sim

hail

Hail Genomics Analytics

skilled-scipkg/hail

hiphive

hiphive Force-Constant Modeling

skilled-scipkg/hiphive

hoomd-blue

HOOMD-blue Particle Simulation

skilled-scipkg/hoomd-blue

itensor

ITensor Tensor Network Library

skilled-scipkg/ITensor

itensors-jl

ITensors.jl Tensor Network Library

skilled-scipkg/ITensors.jl

jdftx

JDFTx

skilled-scipkg/jdftx

jobflow

Jobflow Computational Workflow Library

skilled-scipkg/jobflow

kadanoffbaym-jl

KadanoffBaym.jl

skilled-scipkg/KadanoffBaym.jl

kite

KITE Quantum Transport Suite

skilled-scipkg/kite

kratos

Kratos Multiphysics

skilled-scipkg/Kratos

kwant

Kwant Quantum Transport Toolkit

skilled-scipkg/kwant

lammps

LAMMPS Molecular Dynamics

skilled-scipkg/lammps

lightkurve

Lightkurve Kepler and TESS Light-Curve Analysis

skilled-scipkg/lightkurve

limix

LIMIX Genomic Linear Mixed Models

skilled-scipkg/limix

maxwelllink

MaxwellLink Light-Matter Co-Simulation

skilled-scipkg/MaxwellLink

mcdc

MC/DC Neutron Transport

skilled-scipkg/MCDC

meep

Meep Electromagnetic FDTD Simulator

skilled-scipkg/meep

mfem

MFEM Finite Element Library

skilled-scipkg/mfem

mitgcm

MIT General Circulation Model (MITgcm)

skilled-scipkg/MITgcm

modflow6

MODFLOW 6 Groundwater Model

skilled-scipkg/modflow6

molecool

MoleCool Molecular Laser Cooling Simulator

skilled-scipkg/MoleCool

mom6

MOM6 Modular Ocean Model

skilled-scipkg/MOM6

moose

MOOSE Multiphysics Framework

skilled-scipkg/moose

mpas-model

MPAS Model for Prediction Across Scales

skilled-scipkg/MPAS-Model

mujoco

MuJoCo Physics Simulator

skilled-scipkg/mujoco

mumax3

MuMax3 Micromagnetic Simulator

skilled-scipkg/3

nekrs

nekRS CFD Solver

skilled-scipkg/nekRS

nessi

NESSi Non-Equilibrium Systems Simulation

skilled-scipkg/nessi

nest-simulator

NEST Spiking Neural Network Simulator

skilled-scipkg/nest-simulator

netket

NetKet Quantum Many-Body ML

skilled-scipkg/netket

neuron

NEURON Neural Simulator

skilled-scipkg/nrn

nextflow

Nextflow Scientific Workflow Engine

skilled-scipkg/nextflow

nwchem

NWChem Computational Chemistry

skilled-scipkg/nwchem

openbabel

Open Babel

skilled-scipkg/openbabel

openems

openEMS Electromagnetic Solver

skilled-scipkg/openEMS

openff-toolkit

Open Force Field Toolkit

skilled-scipkg/openff-toolkit

openfoam-dev

OpenFOAM-dev CFD Platform

skilled-scipkg/OpenFOAM-dev

openmc

OpenMC Monte Carlo Particle Transport

skilled-scipkg/openmc

openmm

OpenMM Molecular Dynamics Toolkit

skilled-scipkg/openmm

openmoc

OpenMOC Reactor Physics Solver

skilled-scipkg/OpenMOC

openmx

OpenMX Materials DFT Package

skilled-scipkg/openmx

opensees

OpenSees Earthquake Engineering Simulator

skilled-scipkg/OpenSees

opensn

OpenSn Linear Boltzmann Solver

skilled-scipkg/opensn

opm-simulators

OPM Flow Reservoir Simulator

skilled-scipkg/opm-simulators

oqupy

OQuPy

skilled-scipkg/OQuPy

packmol

Packmol Molecular Configuration Builder

skilled-scipkg/packmol

palabos

Palabos Lattice Boltzmann CFD

skilled-scipkg/palabos

parflow

ParFlow Watershed Flow Model

skilled-scipkg/parflow

pennylane

PennyLane

skilled-scipkg/pennylane

perceval

Perceval Photonic Quantum Toolkit

skilled-scipkg/Perceval

phono3py

Phono3py

skilled-scipkg/phono3py

phonopy

Phonopy Phonon Lattice Dynamics

skilled-scipkg/phonopy

photutils

Photutils Astronomical Photometry Toolkit

skilled-scipkg/photutils

picongpu

PIConGPU

skilled-scipkg/picongpu

plink-ng

PLINK 2 Genome Association Toolkit

skilled-scipkg/plink-ng

precice

preCICE Coupling Library

skilled-scipkg/precice

psc

PSC Particle-in-Cell Plasma Simulator

skilled-scipkg/psc

psi4

Psi4 Quantum Chemistry

skilled-scipkg/psi4

pybinding

Pybinding Tight Binding Toolkit

skilled-scipkg/pybinding

pyfr

PyFR High-Order CFD Solver

skilled-scipkg/PyFR

pyhf

pyhf HistFactory Inference Toolkit

skilled-scipkg/pyhf

pyiron_base

pyiron Base Workflow Core

skilled-scipkg/pyiron_base

pylcp

PyLCP Laser Cooling Physics

skilled-scipkg/pylcp

pylith

PyLith Tectonic Deformation Simulator

skilled-scipkg/pylith

pynbody

Pynbody Astrophysical Simulation Analysis

skilled-scipkg/pynbody

pysam

Pysam Genomics I/O

skilled-scipkg/pysam

pyscf

PySCF Quantum Chemistry

skilled-scipkg/pyscf

q-e

Quantum ESPRESSO

skilled-scipkg/q-e

qibo

Qibo Quantum Simulation and Control

skilled-scipkg/qibo

qiskit

Qiskit Quantum SDK

skilled-scipkg/qiskit

quantica-jl

Quantica.jl Lattice Quantum Systems

skilled-scipkg/Quantica.jl

quantumoptics-jl

QuantumOptics.jl Quantum Dynamics Simulator

skilled-scipkg/QuantumOptics.jl

quimb

Quimb Quantum Tensor Networks

skilled-scipkg/quimb

qulacs

Qulacs Quantum Circuit Simulator

skilled-scipkg/qulacs

qutip

QuTiP Quantum Toolbox

skilled-scipkg/qutip

rdkit

RDKit Cheminformatics Toolkit

skilled-scipkg/rdkit

rmg-py

RMG-Py Reaction Mechanism Generator

skilled-scipkg/RMG-Py

root

CERN ROOT Data Analysis Framework

skilled-scipkg/root

scanpy

Scanpy Single-Cell Toolkit

skilled-scipkg/scanpy

scikit-allel

scikit-allel Population Genetics

skilled-scipkg/scikit-allel

scikit-bio

scikit-bio Bioinformatics Library

skilled-scipkg/scikit-bio

scqubits

scqubits superconducting qubit simulator

skilled-scipkg/scqubits

scuff-em

SCUFF-EM Electromagnetic BEM Suite

skilled-scipkg/scuff-em

scvi-tools

scvi-tools Single-Cell Probabilistic Modeling

skilled-scipkg/scvi-tools

seissol

SeisSol Earthquake Wave Simulator

skilled-scipkg/SeisSol

sfepy

SfePy Finite Element PDE Solver

skilled-scipkg/sfepy

sisl

sisl Electronic Structure Toolkit

skilled-scipkg/sisl

smilei

Smilei Plasma PIC Simulator

skilled-scipkg/Smilei

snakemake

Snakemake Workflow Manager

skilled-scipkg/snakemake

specfem3d-globe

SPECFEM3D Globe

skilled-scipkg/specfem3d_globe

specutils

Specutils Astronomical Spectroscopy

skilled-scipkg/specutils

spglib

Spglib Crystal Symmetry Toolkit

skilled-scipkg/spglib

squidpy

Squidpy Spatial Omics Analysis

skilled-scipkg/squidpy

starry

starry stellar and exoplanet mapper

skilled-scipkg/starry

strawberryfields

Strawberry Fields Continuous-Variable Quantum Toolkit

skilled-scipkg/strawberryfields

su2

SU2 Open-Source CFD Suite

skilled-scipkg/SU2

sunny-jl

Sunny.jl Magnetic Materials Modeling

skilled-scipkg/Sunny.jl

sw4

SW4 Seismic Waves Solver

skilled-scipkg/sw4

swift

SWIFT Astrophysical Simulation Engine

skilled-scipkg/SWIFT

tdnegf

TDNEGF Hybrid Quantum Transport

skilled-scipkg/TDNEGF

tenpy

TeNPy Tensor Network Python

skilled-scipkg/tenpy

thermo

Thermo Chemical Engineering Thermodynamics

skilled-scipkg/thermo

tkwant

Tkwant Time-Dependent Quantum Transport

skilled-scipkg/tkwant

tvb-root

The Virtual Brain Core

skilled-scipkg/tvb-root

uproot5

Uproot5 ROOT I/O

skilled-scipkg/uproot5

vampire

VAMPIRE Atomistic Spin Dynamics Simulator

skilled-scipkg/vampire

wannier_tools

WannierTools Topological Materials Toolkit

skilled-scipkg/wannier_tools

warpx

WarpX PIC Plasma Simulator

skilled-scipkg/warpx

wrf

WRF Weather Forecasting Model

skilled-scipkg/WRF

xtb

xTB Extended Tight-Binding Quantum Chemistry

skilled-scipkg/xtb

yt

yt Volumetric Simulation Analysis

skilled-scipkg/yt